Books, Conference Proceedings and Journal Editor

20.		A história centenária da Associação de Futebol de Braga João M. Fernandes A.F. Braga, Braga, Portugal, 2022.
19.		Essentials of computing systems João M. Fernandes UMinho Editora, Braga, Portugal, 2022. (©  UMinho Editora: 1st ed. 2nd ed.)
18.		A história do Sporting Clube de Braga João M. Fernandes and Eduardo P. Oliveira Contraponto Editores, Lisboa, Portugal, 2021. (©  Contraponto)
17.		Requisitos em projetos de software e de sistemas de informação João M. Fernandes and Ricardo J. Machado Novatec, São Paulo, Brazil, 2017. (©  Novatec)
16.		Requirements in engineering projects João M. Fernandes and Ricardo J. Machado Lecture Notes in Management and Industrial Engineering, Springer, 2016. (©  Springer)
15.		Software business João M. Fernandes, Ricardo J. Machado, and Krzysztof Wnuk Lecture Notes in Business Information Processing, vol. 210, Springer, 2015. (©  Springer)
14.		Guest editors' foreword: Selected papers from the International Workshop on Model-based Methodologies for Pervasive and Embedded Software João M. Fernandes and Dov Dori Innovations in Systems and Software Engineering 8(1):1-2, Springer, ISSN 1614-5046, Mar/2012. (©  Springer)
13.		Selected papers from the 10th International Conference on Application of Concurrency to System Design (ACSD 2010) Luís Gomes, Victor Khomenko, and João M. Fernandes IET Computers & Digital Techniques 5(6):425-426, IET, ISSN 1751-8601, Dec/2011. (©  IET)
12.		Generative and transformational techniques in software engineering III João M. Fernandes, Ralf Lämmel, Joost Visser, João Saraiva Lecture Notes in Computer Science, vol. 6491, Springer, 2011. (©  Springer)
11.		Proceedings of 7th International Workshop on Model-based Methodologies for Pervasive and Embedded Software (MOMPES 2010) Goetz Botterweck, Luis Lamb, and João M. Fernandes Antwerpen, Belgium, ACM, Sep/2010. (©  ACM)
10.		Proceedings of the 10th International Conference on Application of Concurrency to System Design (ACSD 2010) Luís Gomes, Victor Khomenko, and João M. Fernandes Braga, Portugal, IEEE CS Press, Jun/2010. (©  IEEE)
9.		Proceedings of the 4th International Conference on Software Engineering Advances (ICSEA 2009) Kenneth Boness, João M. Fernandes, Jon G. Hall, Ricardo J. Machado, and Roy Oberhauser Porto, Portugal, IEEE CS Press, Sep/2009.
8.		Behavioral modeling for embedded systems and technologies: Applications for design and implementation Luís Gomes and João M. Fernandes IGI Global, Jul/2009. (©  IGI Global)
7.		Proceedings of 6th International Workshop on Model-based Methodologies for Pervasive and Embedded Software (MOMPES 2009) João M. Fernandes, Luis Lamb, Ricardo J. Machado, and Flávio R. Wagner Vancouver, Canada, IEEE CS Press, Apr/2009. (©  IEEE)
6.		Proceedings of 5th International Workshop on Model-based Methodologies for Pervasive and Embedded Software (MOMPES 2008) Ricardo J. Machado, João M. Fernandes, Flávio R. Wagner, and Rick Kazman Budapest, Hungary, IEEE CS Press, Apr/2008. (©  IEEE)
5.		Proceedings of 4th International Workshop on Model-based Methodologies for Pervasive and Embedded Software (MOMPES 2007) João M. Fernandes, Ricardo J. Machado, Ridha Khedri, and Siobhán Clarke Braga, Portugal, IEEE CS Press, Mar/2007. (©  IEEE)
4.		Proceedings of Joint Meeting of the 4th Workshop on Model-Based Development of Computer Based Systems (MBD) and 3rd International Workshop on Model-based Methodologies for Pervasive and Embedded Software (MOMPES 2006) Ricardo J. Machado, João M. Fernandes, Bernhard Schätz, and Matthias Riebisch Potsdam, Alemanha, IEEE CS Press, Mar/2006. (©  IEEE)
3.		Guest editors' foreword: Selected papers from the International Workshop on Model-based Methodologies for Pervasive and Embedded Software Johan Lilius, Ricardo J. Machado, Dragos Truscan, João M. Fernandes, and Ivan Porres Nordic Journal of Computing 12(3):198-9, ISSN 1236-6064, Dec/2005.
2.		Proceedings of the 2nd Workshop on Model-based Methodologies for Pervasive and Embedded Software (MOMPES 2005) Johan Lilius, Ricardo J. Machado, Dragos Truscan, and João M. Fernandes Rennes, France, TUCS General Publication N. 39, May/2005.
1.		Proceedings of the 1st Workshop on Model-based Methodologies for Pervasive and Embedded Software (MOMPES 2004) João M. Fernandes, Johan Lilius, Ricardo J. Machado, and Ivan Porres Hamilton, ON, Canada, TUCS General Publication N. 29, May/2004.

Papers in journals with peer review

32.		Improving incident management processes with feature models Karam Ignaim, João M. Fernandes Journal of Cyber Security and Mobility 13(5), ISSN 2245-1439, May/2024. (©  River Publishers) [Accepted for publication]
31.		An industrial experience of using reference architectures for mapping features to code Karam Ignaim, João M. Fernandes, and André L. Ferreira Science of Computer Programming 234:103087, ISSN 0167-6423, May/2024. (©  Elsevier)
30.		O primeiro jogo oficial de futebol de âmbito nacional do Sporting Clube de Braga João M. Fernandes Bracara Augusta LXXI(131/144):107-123, Braga, Portugal, Apr/2024.
29.		Approach to attributed feature modeling for requirements elicitation in Scrum agile development Karam Ignaim, Sultan M. Al Khatib, Khalid Alkharabsheh, and João M. Fernandes Journal of Theoretical and Applied Information Technology 101(9):3338-3350, ISSN 1992-8645, May/2023. (©  Little Lion)
28.		A concrete product derivation in software product line engineering: A practical approach Karam Ignaim, Khalid Alkharabsheh, André L. Ferreira, and João M. Fernandes International Journal of Computer Applications in Technology 70(3/4):225-232, Inderscience, ISSN 0952-8091, 2022. (©  Inderscience)
27.		A hybrid bi-objective optimization approach for joint determination of safety stock and safety time buffers in multi-item single-stage industrial supply chains Pedro M. Silva, João N.C. Gonçalves, Tiago M. Martins, Luís C. Marques, Miguel Oliveira, Marcelo I. Reis, Luís Araújo, Daniela Correia, José Telhada, Lino Costa, and João M. Fernandes Computers & Industrial Engineering, Elsevier, ISSN 0950-5849, Jun/2022. (©  Elsevier)
26.		Author placement in computer science: A study based on the careers of ACM fellows João M. Fernandes, António Costa, and Paulo Cortez Scientometrics 127(1):351-368, Springer, ISSN 0138-9130, Jan/2022. (©  Springer)
25.		Meta-learning and the new challenges of machine learning José P. Monteiro, Diogo Ramos, Davide Carneiro, Francisco J. Duarte, João M. Fernandes, and Paulo Novais International Journal of Intelligent Systems 36(11):6240-6272, John Wiley & Sons, ISSN 0884-8173, Nov/2021. (©  Wiley)
24.		Alphabetic order of authors in scholarly publications: A bibliometric study for 27 scientific fields João M. Fernandes and Paulo Cortez Scientometrics 125(3):2773-2792, Springer, ISSN 0138-9130, Dec/2020. (©  Springer)
23.		A fundação do Sporting Clube de Braga João M. Fernandes and José B. Machado Bracara Augusta LXVIII(126-127):503-538, Braga, Portugal, Dec/2020.
22.		Business model development and maturity in software-based startups: Insights from a case study Paulo Afonso and João M. Fernandes Proelium VIII(5):99-116, Academia Militar, Lisboa, Portugal, ISSN 1645-8826, Jul/2020.
21.		Characterizing industry-academia collaborations in software engineering: Evidence from 101 projects Vahid Garousi, Dietmar Pfahl, João M. Fernandes, Michael Felderer, Mika V. Mäntylä, David Shepherd, Andrea Arcuri, Ahmet Coşkunçay, and Bedir Tekinerdogan Empirical Software Engineering 24(4):2540-2602, Springer, ISSN 1382-3256, Aug/2019. (©  Springer)
20.		Quantity versus impact of papers in the software engineering community: A quantitate analysis Vahid Garousi and João M. Fernandes Scientometrics 112(2):963-1006, Springer, ISSN 0138-9130, Aug/2017. (©  Springer)
19.		Evolution in the number of authors of computer science publications João M. Fernandes and Miguel P. Monteiro Scientometrics 110(2):529-539, Springer, ISSN 0138-9130, Feb/2017. (©  Springer)
18.		Promoting entrepreneurship among informatics engineering students: Insights from a case study João M. Fernandes, Paulo Afonso, Victor Fonte, Victor Alves, and António Nestor Ribeiro European Journal of Engineering Education 42(1):91-108, Taylor & Francis, ISSN 0304-3797, Jan/2017. (©  Taylor & Francis)
17.		Highly-cited papers in software engineering: The top-100 Vahid Garousi and João M. Fernandes Information and Software Technology 71:108-28, Elsevier, ISSN 0929-5585, Mar/2016. (©  Elsevier)
16.		Cyber-physical systems design: Transition from functional to architectural models Rosane Fátima Passarini, Jean-Marie Farines, João M. Fernandes, and Leandro Buss Becker Design Automation for Embedded Systems 19(4):345-66, Springer, ISSN 0929-5585, Dec/2015. (©  Springer)
15.		Authorship trends in software engineering João M. Fernandes Scientometrics 101(1):257-71, Springer, ISSN 0138-9130, Oct/2014. (©  Springer)
14.		Enriching MATLAB with aspect-oriented features for developing embedded systems João M. P. Cardoso, João M. Fernandes, Miguel P. Monteiro, Tiago Carvalho, and Ricardo Nobre Journal of Systems Architecture 59(7):412-28, Elsevier, ISSN 1383-7621, Aug/2013. (©  Elsevier)
13.		An integrated approach to develop professional and technical skills for informatics engineering students João M. Fernandes, Natascha van Hattum-Janssen, António Nestor Ribeiro, Victor Fonte, Luís P. Santos, and Pedro Sousa European Journal of Engineering Education 37(2):167-77, Taylor & Francis, ISSN 0304-3797, May/2012. (©  Taylor & Francis)
12.		Multidisciplinary engineering summer school in an industrial setting Peter G. Larsen, João M. Fernandes, Jacek Habel, Hanne Lehrskov, Richard J.C. Vos, Oliver Wallington, and Jan Zidek European Journal of Engineering Education 34(6):511-26, Taylor & Francis, ISSN 0304-3797, Dec/2009. (©  Taylor & Francis)
11.		Formal requirements modeling with executable use cases and coloured Petri nets Jens B. Jørgensen, Simon Tjell and João M. Fernandes Innovations in Systems and Software Engineering 5(1):13-25, Springer, ISSN 1614-5046, Mar/2009. (©  Springer)
10.		An illustrative example of refactoring object-oriented source code with aspect-oriented mechanisms Miguel P. Monteiro and João M. Fernandes Software: Practice and Experience 38(4):361-96, John Wiley & Sons, ISSN 0038-0644, Apr/2008. (©  Wiley)
9.		Integration of DFDs into a UML-based model-driven engineering approach João M. Fernandes, Johan Lilius, and Dragos Truscan Software and Systems Modeling 5(4):403-28, Springer, ISSN 1619-1366, Dec/2006. (©  Springer)
8.		Towards a catalogue of refactorings and code smells for AspectJ Miguel P. Monteiro and João M. Fernandes Transactions on Aspect-Oriented Software Development I, Lecture Notes in Computer Science, vol. 3880, pp. 214-258, Springer, Mar/2006. (©  Springer)
7.		A reference framework for process-oriented software development organizations João M. Fernandes and Francisco J. Duarte Software and Systems Modeling 4(1):94-105, Springer, ISSN 1619-1366, Feb/2005. (©  Springer)
6.		C++ é inadequado para ensinar OO Miguel P. Monteiro and João M. Fernandes Ingenium 2(69):76-8, Ordem dos Engenheiros, ISSN 0870-5968, Set/2002.
5.		Sistemas de informação industriais orientados ao controlo: Perspectivas metodológicas para tecnologias reconfiguráveis Ricardo J. Machado, João M. Fernandes, and Henrique D. Santos Ingenium 2(50):88-92, Ordem dos Engenheiros,ISSN 0870-5968, Jul-Aug/2000.
4.		Projecto de hardware digital orientado por objectos João M. Fernandes and Ricardo J. Machado Anais da Engenharia e Tecnologia Electrotécnica 2(5):5-8, Ordem dos Engenheiros, ISSN 0873-4747, Dec/1997. Also published at 3. Encontro Nacional do Colégio de Engenharia Electrotécnica (ENCEE'97), Matosinhos, Portugal, Jun/1997.
3.		Redes de Petri e VHDL na prototipagem rápida de sistemas digitais Ricardo J. Machado, João M. Fernandes, and Alberto J. Proença Anais da Engenharia e Tecnologia Electrotécnica 2(4):1-4, Ordem dos Engenheiros, ISSN 0873-4747, Jul/1997.
2.		VHDL generation from hierarchical Petri net specifications of parallel controllers João M. Fernandes, Marian Adamski, and Alberto J. Proença IEE Proceedings: Computers and Digital Techniques 144(2):127-37, IEE, Mar/1997. (©  IET)
1.		A heterogeneous computer vision architecture: Implementation issues H.D.Santos, J.C.Ramalho, J.M.Fernandes, and A.J.Proença Computing Systems in Engineering 6(4/5):401-8, Elsevier, 1995. (©  Elsevier)

Chapters in books with peer review

5.		Quality attributes for mobile applications João M. Fernandes and André L. Ferreira Modern Software Engineering Methodologies for Mobile and Cloud Environments, Eds. M. Cruz and S. Paiva, pp. 145-158, IGI Global, 2016. (©  IGI Global)
4.		Aspect-oriented refactoring of Java programs Miguel P. Monteiro and João M. Fernandes Java in Academia and Research, Ed. K. Cai, iConcept Press, 2011. (©  iConcept)
3.		Business Modeling in Process-Oriented Organizations for RUP-based Software Development Francisco J. Duarte, João M. Fernandes, and Ricardo J. Machado Reference Modeling for Business Systems Analysis, Eds. P. Fettke and P. Loos, chap. 5, pp. 98-117, Idea Group, Hershey, PA, USA, Oct/2006. (©  IGI Global)
2.		Specification of requirements models Ricardo J. Machado, Isabel Ramos, and João M. Fernandes Engineering and Managing Software Requirements, Eds. A. Aurum and C. Wohlin, chap. 3, pp. 47-68, Springer, Jul/2005. (©  Springer)
1.		An evolutionary approach to the use of Petri net based models: From parallel controllers to HW/SW co-design Ricardo J. Machado, João M. Fernandes, António J. Esteves, and Henrique D. Santos Hardware Design and Petri Nets, EdS. A. Yakovlev, L. Gomes, and L. Lavagno, chapter 11, pp. 205-222, Kluwer Academic Publishers, Boston, MA, USA, Feb/2000. (©  Springer) Also published at 1st Workshop on Hardware Design and Petri Nets (HWPN'98), within the 19th Int. Conf. on Application and Theory of Petri Nets 1998 (ICATPN 1998), Lisbon, Portugal, pp. 139-153, Jun/1998.

Publications in International Conferences with peer review

81.	A 5G-based authentication framework for V2X communication Diana Magalhães, Vinicius C.Ferreira, Nelson Rodrigues, and João M. Fernandes IEEE Conference on Standards for Communications and Networking (CSCN 2023), Munich, Germany, p. 385, Nov/2023. (©  IEEE)
80.	Impact of remote work on Portuguese software professionals during the COVID-19 pandemic Ana J. Almeida, Jácome Cunha, and João M. Fernandes XXVI Ibero-American Conference on Software Engineering (CIbSE 2023), Montevideo, Uruguay, pp. 191-205, Apr/2023. (©  SBC)
79.	Transforming ideas and developing entrepreneurship skills in computing sciences and informatics engineering courses Edward David Moreno, João M. Fernandes, Victor Alves, Maria Elena León Olave, and Paulo Afonso 11th Euro American Conference on Telematics and Information Systems (EATIS 2022), Aveiro, Portugal, Jun/2022. (©  ACM)
78.	Engineering education in a context of VUCA João M. Fernandes and Paulo Afonso 4th International Conference of the Portuguese Society for Engineering Education (CISPEE 2021), Lisbon, Portugal, Feb/2021. (©  IEEE)
77.	Web based object annotation tool using a Triplet-ReID sorting approach Afonso Costa, André L. Ferreira, and João M. Fernandes 10th International Conference on Pattern Recognition Applications and Methods (ICPRAM 2021), Feb/2021. (©  ScitePress)
76.	A software engineering course that promotes entrepreneurship: Insights from a VUCA perspective João M. Fernandes and Paulo Afonso 11th International Conference on Software Business (ICSOB 2020), Karlskrona, Sweden, Springer, Lecture Notes in Business Information Processing series, vol. 336, pp. 157-171, Nov/2020. (©  Springer)
75.	On the use of smartphone sensors for developing advanced driver assistance systems Nuno M. Santos, André L. Ferreira, and João M. Fernandes 4th EAI International Conference on IoT in Urban Space (Urb-IoT 2019), Springer, Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering, vol. 323, pp. 102-114, Braga, Portugal, Dec/2019. (©  Springer)
74.	An industrial case study for adopting software product lines in automotive industry: An evolution-based approach for software product lines (EVOA-SPL) Karam Ignaim and João M. Fernandes 7th International Workshop on Reverse Variability Engineering (REVE 2019), within the 23rd International Systems and Software Product Line Conference (SPLC 2019), Paris, France, ACM, vol. B, art. 88, Sep/2019. (©  ACM)
73.	Bibliometric analysis of 50 years of IEEE Industrial Electronics Society publications João M. Fernandes, João P. Barros, and Luís Gomes 44th Annual Conference of the IEEE Industrial Electronics Society (IECON 2018), Washington, DC, USA, pp. 3013-3020, Oct/2018. (©  IEEE)
72.	Data requirements elicitation in big data warehousing António A.C. Vieira, Luís Pedro, Maribel Y. Santos, João M. Fernandes, and Luís S. Dias 15th European, Mediterranean and Middle Eastern Conference on Information Systems (EMCIS 2018), Limassol, Cyprus, Springer, Lecture Notes in Business Information Processing, vol. 341, pp. 106-113, Oct/2018. (©  Springer)
71.	A systematic reuse-based approach for customized cloned variants Karam Ignaim, João M. Fernandes, André L. Ferreira, and Jana Seidel 11th International Conference on the Quality of Information and Communications Technology (QUATIC 2018), Coimbra, Portugal, IEEE CS Press, pp. 287-292, Sep/2018. (©  IEEE)
70.	Determinants for the success of software startups: Insights from a regional cluster Paulo Afonso and João M. Fernandes 9th International Conference on Software Business (ICSOB 2018), Tallinn, Estonia, Springer, Lecture Notes in Business Information Processing, vol. 336, pp. 127-141, Jun/2018. (©  Springer)
69.	Changing and pivoting the business model in software startups João M. Fernandes and Paulo Afonso 9th International Conference on Software Business (ICSOB 2018), Tallinn, Estonia, Springer, Lecture Notes in Business Information Processing, vol. 336, pp. 157-171, Jun/2018. (©  Springer)
68.	Savings in internal logistics using an RFID-based software system in a lean context Ana C. Freitas, António F. Maio, Paulo Maia, Nuno Gomes, André Nogueira, João M. Fernandes, Maria S. Carvalho, Anabela C. Alves, António Costa, Paulo Afonso, Pedro V. Silva, Diogo Barbosa, and Samuel Machado 47th International Conference on Computers & Industrial Engineering (CIE47), Lisbon, Portugal, Curran Associates, ISSN 2164-8689, Oct/2017.
67.	Improving internal logistics visibility using RFID: The case of a company in the automotive sector Francisco Costa, Maria S. Carvalho, João M. Fernandes, Anabela C. Alves, and Pedro V. Silva 7th Manufacturing Engineering Society International Conference (MESIC 2017), Vigo, Spain, Procedia Manufacturing vol. 13, pp. 1261-1268, Elsevier, ISSN 2351-9789, Jun/2017. (©  Elsevier)
66.	Industry-academia collaborations in software engineering: An empirical analysis of challenges, patterns and anti-patterns in research projects Vahid Garousi, Michael Felderer, João M. Fernandes, Dietmar Pfahl, and Mika V. Mäntylä 21st International Conference on Evaluation and Assessment in Software Engineering (EASE 2017), Karlskrona, Sweden, pp. 224-229, Jun/2017. (©  ACM)
65.	Using Scrum together with UML models: A collaborative university-industry R&D software project Nuno Santos, João M. Fernandes, Maria S. Carvalho, Pedro Vaz Silva, Fábio A. Fernandes, Márcio P. Rebelo, Diogo Barbosa, Paulo Maia, Marco Couto, and Ricardo J. Machado 16th International Conference on Computational Science and Applications (ICCSA 2016), Beijing, China, Springer, Lecture Notes in Computer Science, vol. 9789, pp. 480-495, Jul/2016. (©  Springer)
64.	iFloW: An integrated logistics software system for inbound supply chain traceability Nuno Santos, Diogo Barbosa, Paulo Maia, Fábio A. Fernandes, Márcio P. Rebelo, Pedro Vaz Silva, Maria S. Carvalho, João M. Fernandes, and Ricardo J. Machado 8th International Conference on Interoperability for Enterprise Systems and Applications (I-ESA 2016), Guimarães, Portugal, pp. 187-197, Springer, Mar-Apr/2016. (©  Springer)
63.	Comparing AHP and ELECTRE I for prioritizing software requirements João M. Fernandes, Susana P. Rodrigues, and Lino A. Costa 16th IEEE/ACIS International Conference on Software Engineering, Artificial Intelligence, Networking and Parallel/Distributed Computing (SNPD 2015), Takamatsu, Japan, pp. 684-691, Jun/2015. (©  IEEE)
62.	Assisting data warehousing populating processes design through modelling using coloured Petri nets Diogo Silva, João M. Fernandes, and Orlando Belo 3rd International Conference on Simulation and Modeling Methodologies, Technologies and Applications (SIMULTECH 2013), Reykjavík, Iceland, pp. 35-42, Jul/2013.
61.	A transformation of business process models into software-executable models using MDA Nuno A. Santos, Francisco J. Duarte, Ricardo J. Machado, and João M. Fernandes Software Quality Days (SWQD 2013), Vienna, Austria, Lecture Notes in Business Information Processing, vol. 133, pp. 147-167, Springer, Jan/2013. (©  Springer)
60.	Colored Petri nets in the simulation of ETL standard tasks Diogo Silva, Orlando Belo, and João M. Fernandes 6th European Simulation and Modelling Conference (ESM 2012), Essen, Germany, Oct/2012.
59.	Peer feedback: Quality and quantity in large groups Natascha van Hattum-Janssen and João M. Fernandes 40th SEFI Annual Conference (SEFI 2012), Thessaloniki, Greece, pp. 152-153, Sep/2012. (©  SEFI)
58.	Identification and assessment of behavioural competences in multidisciplinary teams within design projects Diogo Campos, Rui M. Lima and João M. Fernandes 4th International Symposium on Project Approaches in Engineering Education (PAEE 2012), São Paulo, Brazil, pp. 15-22, Jul/2012.
57.	BIM: A methodology to transform business processes into software systems Francisco J. Duarte, Ricardo J. Machado, and João M. Fernandes Software Quality Days (SWQD 2012), Vienna, Austria, Lecture Notes in Business Information Processing, vol. 94, pp. 39-58, Springer, Jan/2012. (©  Springer)
56.	Peer-assessment in projects: An analysis of qualitative feedback Natascha van Hattum-Janssen and João M. Fernandes 3rd International Symposium on Project Approaches in Engineering Education (PAEE 2011), Lisbon, Portugal, pp. 51-57, Oct/2011.
55.	The APEX framework: Prototyping of ubiquitous environments based on Petri nets José L. Silva, José C. Campos, Óscar R. Ribeiro, João M. Fernandes, Michael Harrison 3rd Conference on Human-Centred Software Engineering (HCSE 2010), Reykjavik, Iceland, Lecture Notes in Computer Science, vol. 6409, pp. 6-21, Springer, Oct/2010. (©  Springer)
54.	Classification and comparison of agile methods João M. Fernandes and Mauro Almeida 7th International Conference on the Quality of Information and Communications Technology (QUATIC 2010), Porto, Portugal, IEEE CS Press, pp. 391-396, Sep/2010. (©  IEEE)
53.	Scenario-based modeling in industrial information systems Ricardo J. Machado and João M. Fernandes, João P. Barros, Luís Gomes 7th IFIP TC10 Working Conference on Distributed and Parallel Embedded Systems (DIPES 2010), Brisbane, Australia, pp. 19-30, Springer, Sep/2010. (©  Springer)
52.	A technique to classify and compare agile methods João M. Fernandes and Mauro Almeida 11th International Conference on Agile Software Development (XP 2010), Trondheim, Norway, Lecture Notes in Business Information Processing, vol. 48, pp. 385-386, Springer, Jun/2010. (©  Springer)
51.	Combining Petri nets and UML for model-based software engineering João M. Fernandes International Workshop on Petri Nets and Software Engineering (PNSE 2010), within the 31st International Conference on Application and Theory of Petri Nets and Other Models of Concurrency (PETRI NETS 2010), Braga, Portugal, Jun/2010.
50.	A domain-specific aspect language for transforming MATLAB programs João M.P. Cardoso, Pedro C. Diniz, Miguel P. Monteiro, João M. Fernandes and João Saraiva 5th Domain-Specific Aspect Languages Workshop (DSAL 2010), within the 9th International Conference on Aspect-Oriented Software Development (AOSD 2010), Rennes and Saint Malo, France, Mar/2010.
49.	PlayScrum: A card game to learn the Scrum agile method João M. Fernandes and Sónia M. Sousa 2nd International Conference on Games and Virtual Worlds for Serious Applications (VS-GAMES 2010), Braga, Portugal, IEEE CS Press, pp. 52-59, Mar/2010. (©  IEEE)
48.	Validation of scenario-based business requirements with coloured Petri nets Óscar R. Ribeiro and João M. Fernandes 4th International Conference on Software Engineering Advances (ICSEA 2009), Porto, Portugal, IEEE CS Press, pp. 250-255, Sep/2009. (©  IEEE)
47.	A requirements engineering and management training course for software development professionals João M. Fernandes, Ricardo J. Machado, and Stephen Seidman 22th Conference on Software Engineering Education & Training (CSEE&T 2009), Hyderabad, India, IEEE CS Press, pp. 20-25, Feb/2009. (©  IEEE)
46.	Expressing environment assumptions and real-time requirements for a distributed embedded system with shared variables Simon Tjell and João M. Fernandes 6th IFIP TC10 Working Conference on Distributed and Parallel Embedded Systems (DIPES 2008), Milano, Italy, pp. 79-88, Springer, Oct/2008. (©  Springer)
45.	Requirements engineering for reactive systems: Coloured Petri nets for an elevator controller João M. Fernandes, Jens B. Jørgensen, and Simon Tjell 14th Asia-Pacific Software Engineering Conference (APSEC 2007), Nagoya, Japan, IEEE CS Press, pp. 294-301, Dec/2007. (©  IEEE)
44.	On the use of coloured Petri nets for visual animation Óscar R. Ribeiro and João M. Fernandes 8th Workshop and Tutorial on Practical Use of Coloured Petri Nets and the CPN Tools (CPN 2007), Aarhus, Denmark, pp. 237-241, Oct/2007.
43.	Requirements engineering for reactive systems with coloured Petri nets: The gas pump controller example João M. Fernandes, Simon Tjell, and Jens B. Jørgensen 8th Workshop and Tutorial on Practical Use of Coloured Petri Nets and the CPN Tools (CPN 2007), Aarhus, Denmark, pp. 207-222, Oct/2007.
42.	Teaching embedded systems engineering in a software-oriented computing degree João M. Fernandes and Ricardo J. Machado 37th Annual ASEE/IEEE Frontiers in Education Conference (FIE 2007), Milwaukee, WI, USA, Oct/2007. (©  IEEE)
41.	Automated information systems generation for process-oriented organizations Francisco J. Duarte, Ricardo J. Machado, and João M. Fernandes 6th International Conference on the Quality of Information and Communications Technology (QUATIC 2007), Lisbon, Portugal, IEEE CS Press, pp. 223-227, Sep/2007. (©  IEEE)
40.	Validation of reactive software from scenario-based models Óscar R. Ribeiro and João M. Fernandes 6th International Conference on the Quality of Information and Communications Technology (QUATIC 2007), Lisbon, Portugal, IEEE CS Press, pp. 213-217, Sep/2007. (©  IEEE)
39.	Deriving software architectures for CRUD applications: The FPL tower interface case study Atif Mashkoor and João M. Fernandes 2nd International Conference on Software Engineering Advances (ICSEA 2007), Cap Esterel, France, IEEE CS Press, Aug/2007. (©  IEEE)
38.	Translating synchronous Petri nets into PROMELA for verification of behavioural properties Óscar R. Ribeiro and João M. Fernandes 2nd IEEE International Symposium on Industrial Embedded Systems (SIES 2007), Lisbon, Portugal, IEEE, pp. 266-273, Jul/2007. (©  IEEE)
37.	Designing tool support for translating use cases and UML 2.0 sequence diagrams into a coloured Petri net João M. Fernandes, Simon Tjell, Jens B. Jørgensen, and Óscar R. Ribeiro 6th International Workshop on Scenarios and State Machines (SCESM 2007), within the 29th International Conference on Software Engineering (ICSE 2007), Minneapolis, MN, USA, IEEE CS Press, May/2007. (©  IEEE)
36.	A two-year software engineering M.Sc. degree designed under the Bologna declaration principles João M. Fernandes and Ricardo J. Machado 1st International Conference on Software Engineering Advances (ICSEA 2006), Tahiti, French Polynesia, IEEE CS Press, Oct-Nov/2006. (©  IEEE)
35.	A demonstration case on the transformation of software architectures for service specification João M. Fernandes, Ricardo J. Machado, Paula A. Monteiro, and Helena C. Rodrigues 5th IFIP TC10 Working Conference on Distributed and Parallel Embedded Systems (DIPES 2006), Braga, Portugal, pp. 235-244, Springer, Oct/2006. (©  Springer)
34.	Refinement of software architectures by recursive model transformations Ricardo J. Machado, João M. Fernandes, Paula A. Monteiro, Helena C. Rodrigues 7th International Conference on Product Focused Software Process Improvement (PROFES 2006), Lecture Notes in Computer Science, vol. 4034, pp. 422-428, Springer, Jun/2006. (©  Springer)
33.	Adding aspect-oriented features to MATLAB João Cardoso, João M. Fernandes, and Miguel P. Monteiro Workshop on Software Engineering Properties of Languages and Aspect Technologies (SPLAT 2006), within the 5th International Conference on Aspect-Oriented Software Development (AOSD 2006), Bonn, Germany, Mar/2006.
32.	Refactoring a Java code base to AspectJ: An illustrative example Miguel P. Monteiro and João M. Fernandes 21st IEEE International Conference on Software Maintenance (ICSM 2005), Budapest, Hungary, IEEE CS Press, pp. 17-26, Sep/2005. (©  IEEE)
31.	Integration of Embedded Software with Corporate Information Systems Ricardo J. Machado and João M. Fernandes 1st IFIP International Embedded Systems Symposium (IESS 2005), Manaus, Brazil, pp. 169-178, Springer, Aug/2005. (©  Springer)
30.	Transformation of UML models for service-oriented software architectures Ricardo J. Machado, João M. Fernandes, Paula A. Monteiro, and Helena C. Rodrigues 12th IEEE International Conference and Workshop on the Engineering of Computer Based Systems (ECBS 2005), Greenbelt, MD, USA, IEEE CS Press, pp. 173-182, Apr/2005. (©  IEEE)
29.	Model checking embedded systems with PROMELA Óscar R. Ribeiro, João M. Fernandes, and Luís F. Pinto 12th IEEE International Conference and Workshop on the Engineering of Computer Based Systems (ECBS 2005), Greenbelt, MD, USA, IEEE CS Press, pp. 378-385, Apr/2005. (©  IEEE)
28.	Towards a catalog of aspect-oriented refactorings Miguel P. Monteiro and João M. Fernandes 4rd International Conference on Aspect-Oriented Software Development (AOSD 2005), Chicago, IL, USA, ACM Press, pp. 111-122, Mar/2005. (©  ACM)
27.	Pitfalls of AspectJ implementations of some of the Gang-of-Four design patterns Miguel P. Monteiro and João M. Fernandes Taller de Trabajo en Desarrollo de Software Orientado a Aspectos (DSOA 2004), within the IX Jornadas de Ingeniería del Software y Bases de Datos (JISBD 2004), Malaga, Spain, pp. 41-48, Informe Técnico TR23/2004, Dep. Informática, Universidad de Extremadura, Cáceres, Spain, Nov/2004.
26.	A multi-level design pattern for embedded software Ricardo J. Machado and João M. Fernandes 18th IFIP World Computer Congress (WCC 2004), Working Conference on Distributed and Parallel Embedded Systems (DIPES 2004), Toulouse, France, pp. 247-256, Kluwer Academic Publishers, Boston, MA, USA, Aug/2004. (©  Springer)
25.	A model-based approach to the design of Fieldbus systems Manuel B. Barbosa and João M. Fernandes 1st Workshop on Model-based Methodologies for Pervasive and Embedded Software (MOMPES 2004), within the 4th International Conference on Application of Concurrency to System Design (ACSD'04), Hamilton, Ontario, Canada, pp. 107-123, Jun/2004.
24.	Tool support for DFD-UML model-based transformations Dragos Truscan, João M. Fernandes, and Johan Lilius 11th Annual IEEE International Conference and Workshop on the Engineering of Computer Based Systems (ECBS 2004), Brno, Czech Republic, IEEE CS Press, pp. 388-397, May/2004. (©  IEEE)
23.	Functional and object-oriented views in embedded software modeling João M. Fernandes and Johan Lilius 11th Annual IEEE International Conference and Workshop on the Engineering of Computer Based Systems (ECBS 2004), Brno, Czech Republic, IEEE CS Press, pp. 378-387, May/2004. (©  IEEE)
22.	Using RUP for process-oriented organisations João M. Fernandes and Francisco J. Duarte 5th International Conference on Product Focused Software Process Improvement (PROFES 2004), Lecture Notes in Computer Science, vol. 3009, pp. 348-362, Springer, Apr/2004. (©  Springer)
21.	Object-to-aspect refactorings for feature extraction Miguel P. Monteiro and João M. Fernandes 3rd International Conference on Aspect-Oriented Software Development (AOSD 2004), Lancaster, United Kingdom, Mar/2004.
20.	Some thoughts on refactoring objects to aspects Miguel P. Monteiro and João M. Fernandes Taller de Trabajo en Desarrollo de Software Orientado a Aspectos (DSOA 2003), within the VIII Jornadas de Ingeniería del Software y Bases de Datos (JISBD 2003), Alicante, Spain, pp. 55-64, Informe Técnico TR20/2003, Dep. Informética, Universidad de Extremadura, Cáceres, Spain, Nov/2003.
19.	A RUP-based model for process-oriented software development organizations João M. Fernandes and Francisco J. Duarte Workshop on Process Engineering for Object-Oriented and Component-Based Development, within the 18th Annual ACM SIGPLAN Conference on Object-Oriented Programming, Systems, Languages, and Applications (OOPSLA 2003), Anaheim, CA, USA, pp. 31-42, COTAR, Sydney, Australia, Oct/2003.
18.	Heterogeneous information systems integration: Organizations and tools Ricardo J. Machado and João M. Fernandes 4th International Conference on Product Focused Software Process Improvement (PROFES 2002), Lecture Notes in Computer Science, vol. 2559, pp. 629-643, Springer, Dec/2002. (©  Springer)
17.	Can UML be a system-level language for embedded software? João M. Fernandes and Ricardo J. Machado 17th IFIP World Computer Congress (WCC 2002), Stream of Distributed and Parallel Embedded Systems (DIPES 2002), Montréal, Canada, pp. 1-10, Kluwer Academic Publishers, Boston, MA, USA, Aug/2002. (©  Springer)
16.	System-level object-orientation in the specification and validation of embedded systems João M. Fernandes and Ricardo J. Machado 14th Symposium on Integrated Circuits and System Design (SBCCI 2001), Pirenópolis, Brazil, pp. 8-13, IEEE CS Press, Sep/2001. (©  IEEE)
15.	From use cases to objects: An industrial information systems case study analysis João M. Fernandes and Ricardo J. Machado 7th International Conference on Object-Oriented Information Systems (OOIS 2001), Calgary, Canada, pp. 319-328, Springer, Aug/2001. (©  Springer)
14.	A Petri net meta-model to develop software components for embedded systems Ricardo J. Machado and João M. Fernandes 2nd IEEE International Conference on Application of Concurrency to System Design (ACSD 2001), Newcastle upon Tyne, United Kingdom, pp. 113-122, IEEE CS Press, Jun/2001. (©  IEEE)
13.	A methodology for complex embedded systems design: Petri nets within a UML spproach Ricardo J. Machado, João M. Fernandes, and Henrique D. Santos 2nd IFIP International Workshop on Distributed and Parallel Embedded Systems (DIPES 2000), Schloss Eringerfeld, Germany, pp. 1-10, Kluwer Academic Publishers, Boston, MA, USA, Apr/2001. (©  Springer)
12.	Modeling industrial embedded systems with UML João M. Fernandes, Ricardo J. Machado, and Henrique D. Santos 8th ACM/IEEE/IFIP International Workshop on Hardware/Software Codesign (CODES 2000), San Diego, CA, USA, pp. 18-22, ACM Press, May/2000. (©  ACM)
11.	Hierarchical mechanisms for high-level modelling and simulation of digital systems Ricardo J. Machado, João M. Fernandes, and Alberto J. Proença 5th IEEE International Conference on Electronics, Circuits and Systems (ICECS'98), Lisbon, Portugal, vol. 3, pp. 229-232, Sep/1998. (©  IEEE)
10.	An object-oriented model for rapid prototyping of data path/control systems: A case study Ricardo J. Machado, João M. Fernandes, and Alberto J. Proença 9th IFAC Symposium on Information Control in Manufacturing (INCOM'98), Nancy and Metz, France, vol. 2, pp. 269-274, Jun/1998.
9.	Modeling multi-agent systems activities through colored Petri nets: An industrial production system case study João M. Fernandes and Orlando Belo 16th IASTED International Conference on Applied Infomatics (AI'98), Garmisch-Partenkirchen, Germany, pp. 17-20, Feb/1998.
8.	Genetic regulatory mechanisms by means of extended interactive Petri nets António M. Pina, João M. Fernandes, and Ricardo J. Machado IEEE International Conference on Systems, Man, and Cybernetics (SMC'97), Hyatt Orlando, Orlando, FL, USA, vol. 4, pp. 3912-3917, Oct/1997. (©  IEEE)
7.	Specification of industrial digital controllers with object-oriented Petri nets Ricardo J. Machado, João M. Fernandes, and Alberto J. Proença IEEE International Symposium on Industrial Electronics (ISIE'97), Guimarães, Portugal, vol. 1, pp. 78-83, Jul/1997. (©  IEEE)
6.	EDgAR: A platform for hardware/software codesign António J. Esteves, João M. Fernandes, and Alberto J. Proença 5th Annual Advanced Technology Workshop (ATW'96), Toulouse, France, pp. 19-32, Kluwer Academic Publishers, Boston, MA, USA, Jun/1997. (©  Springer)
5.	SOFHIA: A CAD environment to design digital control systems Ricardo J. Machado, João M. Fernandes, and Alberto J. Proença XIII IFIP International Conference on Computer Hardware Description Languages and Their Applications (CHDL'97), Toledo, Spain, pp. 86-88, Chapman & Hall, Apr/1997. (©  Springer)
4.	EDgAR: A platform for hardware/software codesign António J. Esteves, João M. Fernandes, and Alberto J. Proença 5th Annual Advanced Technology Workshop (ATW'96), Toulouse, France, Jul/1996.
3.	Simulação e síntese de controladores paralelos baseados em redes de Petri João M. Fernandes, António M. Pina, and Alberto J. Proença VII Simpósio Brasileiro de Arquitetura de Computadores - Processamento de Alto Desempenho (SBAC-PAD'95), Canela, RS, Brazil, pp. 481-492, Jul/1995.
2.	Concurrent execution of Petri nets based on agents João M. Fernandes, António M. Pina, and Alberto J. Proença 1st Workshop on Object-Oriented Programming and Models of Concurrency, within the 16th Int. Conf. on Application and Theory of Petri Nets 1995 (ICATPN 1995), Torino, Italy, Jun/1995.
1.	A heterogeneous computer vision architecture: Implementation issues Henrique D. Santos, José C. Ramalho, João M. Fernandes, and Alberto J. Proença 1st Intern. Meeting on Vector and Parallel Processing (VecPar'93), Porto, Portugal, Oct/1993.

Publications in National Conferences with peer review

10.	Adaptação e evolução do ensino de empreendedorismo no domínio do software João M. Fernandes and Paulo S. Afonso V Congresso Nacional de Práticas Pedagógicas no Ensino Superior (CNaPPES 2018), Braga, Portugal, p. 18, Jul/2018.
9.	Ensino de empreendedorismo no domínio do software: 6 anos de história(s) na UMinho João M. Fernandes and Paulo S. Afonso I Jornadas Ensino do Empreendedorismo (JEEP 2015), Coimbra, Portugal, pp. 217-230, Apr/2015.
8.	Prototipagem rápida de ambientes ubíquos José L. Silva, Óscar R. Ribeiro, José C. Campos, João M. Fernandes, and Michael Harrison 4.a Conferência Nacional em Interacção Humano-Computador (Interacção 2010), Aveiro, Portugal, pp. 121-128, Oct/2010.
7.	Componentes de software em LABVIEW para integração em sistemas de informação industriais Manuel M. Carvalho, João M. Fernandes, and Ricardo J. Machado 5. Encontro Nacional do Colégio de Engenharia Electrotécnica (ENCEE 2001), Ordem dos Engenheiros, Matosinhos, Portugal, pp. 27-34, Apr/2001.
6.	Multithreading em supervisão industrial: Descrição de um kernel de tempo-real Sérgio J. Dias, Ricardo J. Machado, and João M. Fernandes 5. Encontro Nacional do Colégio de Engenharia Electrotécnica (ENCEE 2001), Ordem dos Engenheiros, Matosinhos, Portugal, pp. 109-116, Apr/2001.
5.	An object-oriented approach to the co-design of industrial control-based information systems Ricardo J. Machado, João M. Fernandes, and Henrique D. Santos 4th APCA Portuguese Conference on Automatic Control (CONTROLO 2000), Guimarães, Portugal, Oct/2000.
4.	Object-oriented inheritance of statecharts for control applications João M. Fernandes and Ricardo J. Machado 4th APCA Portuguese Conference on Automatic Control (CONTROLO 2000), Guimarães, Portugal, Oct/2000.
3.	Redes de Petri e VHDL na prototipagem rápida de sistemas digitais Ricardo J. Machado, João M. Fernandes, and Alberto J. Proença 3. Encontro Nacional do Colégio de Engenharia Electrotécnica (ENCEE '97), Ordem dos Engenheiros, Matosinhos, Portugal, pp. 83-90, Jun/1997.
2.	A plataforma EDgAR na prototipagem rápida de sistemas digitais António J. Esteves, João M. Fernandes, Henrique D. Santos, and Alberto J. Proença 2. Encontro Nacional do Colégio de Engenharia Electrotécnica (ENCEE '95), Ordem dos Engenheiros, Lisbon, Portugal, pp. 83-89, Dec/1995.
1.	Redes de Petri na especificação e validação de controladores paralelos João M. Fernandes and Alberto J. Proença 1. Encontro Nacional do Colégio de Engenharia Electrotécnica (ENCEE '94), Ordem dos Engenheiros, Lisbon, Portugal, pp. 113-118, May/1994.

Thesis

2.	MIDAS: Metodologia orientada ao objecto para desenvolvimento de sistemas embebidos João M. Fernandes Doutoramento em Informática, Dep. Informática, Universidade do Minho, May/2000.
1.	Redes de Petri e VHDL na especificação de controladores paralelos João M. Fernandes Mestrado em Informática, Dep. Informática, Universidade do Minho, Jul/1994.